Step 5: cauchy_combination (optional)

usage: gsmap run_cauchy_combination [-h] --workdir WORKDIR
                                    [--sample_name SAMPLE_NAME] --trait_name
                                    TRAIT_NAME --annotation ANNOTATION
                                    [--sample_name_list SAMPLE_NAME_LIST [SAMPLE_NAME_LIST ...]]
                                    [--output_file OUTPUT_FILE]

Named Arguments

--workdir

Path to the working directory.

--sample_name

Name of the sample.

--trait_name

Name of the trait being analyzed.

--annotation

Name of the annotation in adata.obs to use.

--sample_name_list

List of sample names to process. Provide as a space-separated list.

--output_file

Path to save the combined Cauchy results. Required when using multiple samples.