gsMap Tutorials

Welcome to the gsMap Tutorials. In this section, we provide detailed examples and guides to help you understand and utilize gsMap effectively. Our tutorials include mouse embryo ST data and three sets of cleaned GWAS summary statistics to demonstrate the application of gsMap in spatially mapping trait-associated cells (spots).

Datasets used in the tutorials

  1. ST data

    1. Mouse E16.5 embryo sagittal section - (E16.5_E1S1.MOSTA.h5ad)

  2. GWAS data

    1. Height - (GIANT_EUR_Height_2022_Nature.sumstats.gz)

    2. Intelligence - (IQ_NG_2018.sumstats.gz)

    3. Mean corpusular hemoglobin concerntration - (BCX2_MCHC_EA_GWAMA.sumstats.gz)

For how to use your own data, please check the Data Format section.

Tutorials

The tutorials are organized as follows: