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gsMap documentation
gsMap documentation

Contents:

  • Installation guide
  • gsMap Tutorials
    • Mouse Embryo (Quick Mode)
    • Mouse Embryo (Step by Step)
    • gsMap Advanced Usage
    • Cases on 10x Visium Data
    • Data Format
  • gsMap Resources Download
  • gsMap Command Line Alphabets
    • format_sumstats (tips)
    • quick_mode (run entire pipeline)
    • Step 1: find_latent_representation
    • Step 2: latent_to_gene
    • Step 3: generate_ldscore
    • Step 4: spatial_ldsc
    • Step 5: cauchy_combination (optional)
    • Step 6: gsMap report (optional)
    • Create Slice Mean
  • Release notes
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